Journal of Computer Science

Development of Neighbors Atomic Coordinate Tables and Plot-Graphical Representation for Tertiary Structure in Proteins

Hamed Fawareh, Jehad Q. Odeh and Nawal Al-Omoush

DOI : 10.3844/jcssp.2010.666.668

Journal of Computer Science

Volume 6, Issue 6

Pages 666-668

Abstract

Problem statement: Contact map prediction is an interesting method for its application in fold recognition and protein tertiary structure determination. Approach: This study developed a method to predict a protein tertiary structure from the amino acid sequence using contact map. The method showed prediction a protein in a binary space of exposure states. The approach produced several procedures to finds a set of three dimensional coordinates consistent with contact map of threshold t. Results: The approach used a Matlab tools for improve protein prediction accuracy. The developed tool selects a set of three dimensional coordinates for distance between nodes. Then, the node mapped into protein structure. Conclusion: Finally the approach produced a plot-graphical representation for tertiary structure in proteins.

Copyright

© 2010 Hamed Fawareh, Jehad Q. Odeh and Nawal Al-Omoush. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.